Sparse Array-matrix class. More...

#include <Matrix_ArraySparse.hxx>

Public Types
typedef Allocator::value_type	value_type
typedef Allocator::pointer	pointer
typedef Allocator::const_pointer	const_pointer
typedef Allocator::reference	reference
typedef Allocator::const_reference	const_reference
typedef T	entry_type
typedef T &	access_type
typedef T	const_access_type
Public Member Functions
	Matrix_ArraySparse ()
	Default constructor.
	Matrix_ArraySparse (int i, int j)
	Constructor.
	~Matrix_ArraySparse ()
	Destructor.
void	Clear ()
	Clears the matrix.
void	Reallocate (int i, int j)
	Reallocates memory to resize the matrix.
void	Resize (int i, int j)
	Reallocates additional memory to resize the matrix.
int	GetM () const
	Returns the number of rows.
int	GetN () const
	Returns the number of columns.
int	GetM (const SeldonTranspose &status) const
	Returns the number of rows of the matrix possibly transposed.
int	GetN (const SeldonTranspose &status) const
	Returns the number of columns of the matrix possibly transposed.
int	GetNonZeros () const
	Returns the number of non-zero entries.
int	GetDataSize () const
	Returns the number of elements stored in memory.
int *	GetIndex (int i) const
	Returns (row or column) indices of non-zero entries in row.
T *	GetData (int i) const
	Returns values of non-zero entries of a row/column.
Vector< T, VectSparse, Allocator > *	GetData () const
	Returns values of non-zero entries.
T	operator() (int i, int j) const
	Access operator.
T &	Get (int i, int j)
	Access operator.
const T &	Get (int i, int j) const
	Access operator.
T &	Val (int i, int j)
	Access operator.
const T &	Val (int i, int j) const
	Access operator.
void	Set (int i, int j, const T &x)
	Sets an element of the matrix.
const T &	Value (int num_row, int i) const
	Returns j-th non-zero value of row/column i.
T &	Value (int num_row, int i)
	Returns j-th non-zero value of row/column i.
int	Index (int num_row, int i) const
	Returns column/row number of j-th non-zero value of row/column i.
int &	Index (int num_row, int i)
	Returns column/row number of j-th non-zero value of row/column i.
void	SetData (int, int, Vector< T, VectSparse, Allocator > *)
	Redefines the matrix.
void	SetData (int, int, T , int )
	Redefines a row/column of the matrix.
void	Nullify (int i)
	Clears a row without releasing memory.
void	Nullify ()
	Clears the matrix without releasing memory.
void	Print () const
	Displays the matrix on the standard output.
void	Assemble ()
	Assembles the matrix.
template<class T0 >
void	RemoveSmallEntry (const T0 &epsilon)
	Removes small coefficients from entries.
void	SetIdentity ()
	Matrix is initialized to the identity matrix.
void	Zero ()
	Non-zero entries are set to 0 (but not removed).
void	Fill ()
	Non-zero entries are filled with values 0, 1, 2, 3 ...
template<class T0 >
void	Fill (const T0 &x)
	Non-zero entries are set to a given value x.
template<class T0 >
Matrix_ArraySparse< T, Prop, Storage, Allocator > &	operator= (const T0 &x)
	Non-zero entries are set to a given value x.
void	FillRand ()
	Non-zero entries take a random value.
void	Write (string FileName) const
	Writes the matrix in a file.
void	Write (ostream &FileStream) const
	Writes the matrix to an output stream.
void	WriteText (string FileName) const
	Writes the matrix in a file.
void	WriteText (ostream &FileStream) const
	Writes the matrix to an output stream.
void	Read (string FileName)
	Reads the matrix from a file.
void	Read (istream &FileStream)
	Reads the matrix from an input stream.
void	ReadText (string FileName)
	Reads the matrix from a file.
void	ReadText (istream &FileStream)
	Reads the matrix from an input stream.
Protected Attributes
int	m_
	Number of rows.
int	n_
	Number of columns.
Vector< Vector< T, VectSparse, Allocator >, VectFull, NewAlloc< Vector< T, VectSparse, Allocator > > >	val_
	rows or columns

Detailed Description

template<class T, class Prop, class Storage, class Allocator = SELDON_DEFAULT_ALLOCATOR<T>>
class Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >

Sparse Array-matrix class.

Sparse matrices are defined by: (1) the number of rows and columns; (2) the number of non-zero entries; (3) an array of vectors ind ind(i) is a vector, which contains indices of columns of the row i (4) an array of vectors val : val(i) is a vector, which contains values of the row i

Definition at line 38 of file Matrix_ArraySparse.hxx.

Constructor & Destructor Documentation

template<class T , class Prop , class Storage , class Allocator >

Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::Matrix_ArraySparse ( ) [inline]

Default constructor.

Builds an empty matrix.

Definition at line 30 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::Matrix_ArraySparse	(	int	i,
		int	j
	)			`[inline]`

Constructor.

Builds a i by j sparse matrix.

Parameters:

	i	number of rows.
	j	number of columns.

Definition at line 46 of file Matrix_ArraySparse.cxx.

Member Function Documentation

template<class T , class Prop , class Storage , class Allocator >

void Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::Assemble ( )

Assembles the matrix.

All the column/row numbers are sorted. If same column/row numbers exist, values are added.

Warning:: If you are using the methods AddInteraction, you don't need to call that method.

Definition at line 627 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

void Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::Clear ( ) [inline]

Clears the matrix.

This methods is equivalent to the destructor. On exit, the matrix is empty (0 by 0).

Definition at line 68 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

T & Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::Get	(	int	i,
		int	j
	)			`[inline]`

Access operator.

Returns the value of element (i, j).

Parameters:

	i	row index.
	j	column index.

Returns:: Element (i, j) of the matrix.

Reimplemented in Seldon::Matrix< T, Prop, ArrayColSymSparse, Allocator >, and Seldon::Matrix< T, Prop, ArrayRowSymSparse, Allocator >.

Definition at line 305 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

const T & Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::Get	(	int	i,
		int	j
	)			const `[inline]`

Access operator.

Returns the value of element (i, j).

Parameters:

	i	row index.
	j	column index.

Returns:: Element (i, j) of the matrix.

Reimplemented in Seldon::Matrix< T, Prop, ArrayColSymSparse, Allocator >, and Seldon::Matrix< T, Prop, ArrayRowSymSparse, Allocator >.

Definition at line 333 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

T * Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::GetData ( int i ) const [inline]

Returns values of non-zero entries of a row/column.

Parameters:

[in] i row (or column) number.

Returns:: The array of values of non-zero entries of row/column i.

Definition at line 243 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocat >

Vector< T, VectSparse, Allocat > * Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocat >::GetData ( ) const [inline]

Returns values of non-zero entries.

Returns:: Array of sparse rows There is a different array for each row/column.

Definition at line 256 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

int Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::GetDataSize ( ) const [inline]

Returns the number of elements stored in memory.

Returns the number of elements stored in memory, i.e. the number of non-zero entries.

Returns:: The number of elements stored in memory.

Definition at line 215 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

int * Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::GetIndex ( int i ) const [inline]

Returns (row or column) indices of non-zero entries in row.

Parameters:

[in] i row (or column) number.

Returns:: The array of column (or row) indices of non-zero entries of row (or column) i.

Definition at line 229 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

int Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::GetM ( ) const [inline]

Returns the number of rows.

Returns:: the number of rows.

Definition at line 143 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

int Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::GetM ( const SeldonTranspose & status ) const [inline]

Returns the number of rows of the matrix possibly transposed.

Parameters:

status

assumed status about the transposition of the matrix.

Returns:: The number of rows of the possibly-transposed matrix.

Definition at line 167 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

int Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::GetN ( ) const [inline]

Returns the number of columns.

Returns:: the number of columns.

Definition at line 154 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

int Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::GetN ( const SeldonTranspose & status ) const [inline]

Returns the number of columns of the matrix possibly transposed.

Parameters:

status

assumed status about the transposition of the matrix.

Returns:: The number of columns of the possibly-transposed matrix.

Definition at line 183 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

int Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::GetNonZeros ( ) const [inline]

Returns the number of non-zero entries.

Returns:: The number of non-zero entries.

Definition at line 197 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

int Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::Index	(	int	i,
		int	j
	)			const `[inline]`

Returns column/row number of j-th non-zero value of row/column i.

Parameters:

`[in]`	i	row/column number.
`[in]`	j	local number.

Returns:: Column/row number of j-th non-zero value of row/column i.

Definition at line 485 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

int & Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::Index	(	int	i,
		int	j
	)			`[inline]`

Returns column/row number of j-th non-zero value of row/column i.

Parameters:

`[in]`	i	row/column number.
`[in]`	j	local number.

Returns:: Column/row number of j-th non-zero value of row/column i.

Definition at line 512 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

void Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::Nullify ( int i ) [inline]

Clears a row without releasing memory.

On exit, the row is empty and the memory has not been released. It is useful for low level manipulations on a Matrix instance.

Definition at line 552 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

void Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::Nullify ( ) [inline]

Clears the matrix without releasing memory.

On exit, the matrix is empty and the memory has not been released. It is useful for low level manipulations on a Matrix instance.

Definition at line 580 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

T Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::operator()	(	int	i,
		int	j
	)			const `[inline]`

Access operator.

Returns the value of element (i, j).

Parameters:

`[in]`	i	row index.
`[in]`	j	column index.

Returns:: Element (i, j) of the matrix.

Reimplemented in Seldon::Matrix< T, Prop, ArrayColSymSparse, Allocator >, and Seldon::Matrix< T, Prop, ArrayRowSymSparse, Allocator >.

Definition at line 276 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

void Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::Print ( ) const

Displays the matrix on the standard output.

Displays elements on the standard output, in text format. Each row is displayed on a single line and elements of a row are delimited by tabulations.

Definition at line 600 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

void Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::Read ( istream & FileStream )

Reads the matrix from an input stream.

Reads a matrix in binary format from an input stream. The number of rows (integer) and the number of columns (integer) are read and matrix elements are then read in the same order as it should be in memory (e.g. row-major storage).

Parameters:

FileStream

output file name.

Definition at line 882 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

void Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::Read ( string FileName )

Reads the matrix from a file.

Reads a matrix stored in binary format in a file. The number of rows (integer) and the number of columns (integer) are read and matrix elements are then read in the same order as it should be in memory (e.g. row-major storage).

Parameters:

FileName

output file name.

Definition at line 854 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

void Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::ReadText ( string FileName )

Reads the matrix from a file.

Reads the matrix from a file in text format.

Parameters:

FileName

input file name.

Definition at line 920 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

void Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::ReadText ( istream & FileStream )

Reads the matrix from an input stream.

Reads a matrix from a stream in text format.

Parameters:

FileStream

input stream.

Definition at line 945 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

void Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::Reallocate	(	int	i,
		int	j
	)			`[inline]`

Reallocates memory to resize the matrix.

On exit, the matrix is a i x j matrix.

Parameters:

	i	number of rows.
	j	number of columns.

Warning:: Data is lost.

Definition at line 88 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

template<class T0 >

void Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::RemoveSmallEntry ( const T0 & epsilon )

Removes small coefficients from entries.

Parameters:

[in] epsilon entries whose values are below epsilon are removed.

Definition at line 641 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

void Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::Resize	(	int	i,
		int	j
	)

Reallocates additional memory to resize the matrix.

On exit, the matrix is a i x j matrix.

Parameters:

	i	number of rows.
	j	number of columns. Data is kept

Definition at line 109 of file Matrix_ArraySparse.cxx.

template<class T, class Prop , class Storage , class Allocator >

void Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::Set	(	int	i,
		int	j,
		const T &	x
	)			`[inline]`

Sets an element of the matrix.

Parameters:

	i	row index.
	j	column index.
	x	new value for the matrix element (i, j).

Reimplemented in Seldon::Matrix< T, Prop, ArrayColSymSparse, Allocator >, and Seldon::Matrix< T, Prop, ArrayRowSymSparse, Allocator >.

Definition at line 418 of file Matrix_ArraySparse.cxx.

template<class T, class Prop , class Storage , class Allocator>

void Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::SetData	(	int	m,
		int	n,
		Vector< T, VectSparse, Allocator > *	val
	)			`[inline]`

Redefines the matrix.

Parameters:

`[in]`	m	new number of rows.
`[in]`	n	new number of columns.
`[in]`	val	array of sparse rows/columns.

Definition at line 566 of file Matrix_ArraySparse.cxx.

template<class T, class Prop , class Storage , class Allocator>

void Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::SetData	(	int	i,
		int	n,
		T *	val,
		int *	ind
	)			`[inline]`

Redefines a row/column of the matrix.

Parameters:

`[in]`	i	row/col number
`[in]`	n	number of non-zero entries in the row
`[in]`	val	values
`[in]`	ind	column numbers

Definition at line 540 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

T & Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::Val	(	int	i,
		int	j
	)			`[inline]`

Access operator.

Returns the value of element (i, j).

Parameters:

	i	row index.
	j	column index.

Returns:: Element (i, j) of the matrix.

Reimplemented in Seldon::Matrix< T, Prop, ArrayColSymSparse, Allocator >, and Seldon::Matrix< T, Prop, ArrayRowSymSparse, Allocator >.

Definition at line 361 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

const T & Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::Val	(	int	i,
		int	j
	)			const `[inline]`

Access operator.

Returns the value of element (i, j).

Parameters:

	i	row index.
	j	column index.

Returns:: Element (i, j) of the matrix.

Reimplemented in Seldon::Matrix< T, Prop, ArrayColSymSparse, Allocator >, and Seldon::Matrix< T, Prop, ArrayRowSymSparse, Allocator >.

Definition at line 390 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

T & Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::Value	(	int	i,
		int	j
	)			`[inline]`

Returns j-th non-zero value of row/column i.

Parameters:

`[in]`	i	row/column number.
`[in]`	j	local number.

Returns:: j-th non-zero entry of row/column i.

Definition at line 459 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

const T & Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::Value	(	int	i,
		int	j
	)			const `[inline]`

Returns j-th non-zero value of row/column i.

Parameters:

`[in]`	i	row/column number.
`[in]`	j	local number.

Returns:: j-th non-zero entry of row/column i.

Definition at line 432 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

void Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::Write ( ostream & FileStream ) const

Writes the matrix to an output stream.

Stores the matrix in a file in binary format. The number of rows (integer) and the number of columns (integer) are written and matrix elements are then written in the same order as in memory (e.g. row-major storage).

Parameters:

FileStream

output file name.

Definition at line 748 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

void Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::Write ( string FileName ) const

Writes the matrix in a file.

Stores the matrix in a file in binary format. The number of rows (integer) and the number of columns (integer) are written and matrix elements are then written in the same order as in memory (e.g. row-major storage).

Parameters:

FileName

output file name.

Definition at line 720 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

void Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::WriteText ( ostream & FileStream ) const

Writes the matrix to an output stream.

Stores the matrix in a file in ascii format. The entries are written in coordinate format (row column value). 1-index convention is used.

Parameters:

FileStream

output file name.

Definition at line 800 of file Matrix_ArraySparse.cxx.

template<class T , class Prop , class Storage , class Allocator >

void Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >::WriteText ( string FileName ) const

Writes the matrix in a file.

Stores the matrix in a file in ascii format. The entries are written in coordinate format (row column value). 1-index convention is used.

Parameters:

FileName

output file name.

Definition at line 775 of file Matrix_ArraySparse.cxx.

The documentation for this class was generated from the following files:

/home/vivien/public_html/.src_seldon/matrix_sparse/Matrix_ArraySparse.hxx
/home/vivien/public_html/.src_seldon/matrix_sparse/Matrix_ArraySparse.cxx

Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator > Class Template Reference

Public Types

Public Member Functions

Protected Attributes

Detailed Description

template<class T, class Prop, class Storage, class Allocator = SELDON_DEFAULT_ALLOCATOR<T>> class Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >

Constructor & Destructor Documentation

Member Function Documentation

template<class T, class Prop, class Storage, class Allocator = SELDON_DEFAULT_ALLOCATOR<T>>
class Seldon::Matrix_ArraySparse< T, Prop, Storage, Allocator >